HL_6ZJ3_027
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GGUAAGC
- Length
- 7 nucleotides
- Bulged bases
- 6ZJ3|1|LF|G|1500
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_027 not in the Motif Atlas
- Homologous match to HL_8C3A_025
- Geometric discrepancy: 0.0398
- The information below is about HL_8C3A_025
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
6ZJ3|1|LF|G|1495
6ZJ3|1|LF|G|1496
6ZJ3|1|LF|U|1497
6ZJ3|1|LF|A|1498
6ZJ3|1|LF|A|1499
6ZJ3|1|LF|G|1500
6ZJ3|1|LF|C|1501
Current chains
- Chain LF
- LSU rRNA chain 5
Nearby chains
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lc
- 60S ribosomal protein L10
- Chain Lq
- Ribosomal protein eL29
Coloring options: