HL_6ZJ3_032

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GCACCCCAACC*C

Length

12 nucleotides

Bulged bases

6ZJ3|1|LF|C|1867, 6ZJ3|1|LF|A|1868, 6ZJ3|1|LF|A|1869

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_032 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.3623

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

6ZJ3|1|LF|G|1861
6ZJ3|1|LF|C|1862
6ZJ3|1|LF|A|1863
6ZJ3|1|LF|C|1870
6ZJ3|1|LF|C|1871
6ZJ3|1|LF|C|1872
6ZJ3|1|LF|C|1867
6ZJ3|1|LF|A|1868
6ZJ3|1|LF|A|1869
6ZJ3|1|LF|C|1870
6ZJ3|1|LF|C|1871
*
6ZJ3|1|LF|C|1872

Current chains

Chain LF

LSU rRNA chain 5

Nearby chains

Chain Li

Ribosomal protein uL22

Chain Lt

Ribosomal protein eL31