HL_6ZJ3_036

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GGCGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_036 not in the Motif Atlas

Geometric match to HL_5TBW_036

Geometric discrepancy: 0.1011

The information below is about HL_5TBW_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZJ3|1|LG|G|2062
6ZJ3|1|LG|G|2063
6ZJ3|1|LG|C|2064
6ZJ3|1|LG|G|2065
6ZJ3|1|LG|A|2066
6ZJ3|1|LG|C|2067

Current chains

Chain LG

LSU rRNA chain 6

Nearby chains

Chain Ln

Ribosomal protein eL27

Chain Lw

Ribosomal protein eL34