HL_6ZJ3_039

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GGUCUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_039 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3381

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6ZJ3|1|LG|G|2206
6ZJ3|1|LG|G|2207
6ZJ3|1|LG|U|2208
6ZJ3|1|LG|C|2209
6ZJ3|1|LG|U|2210
6ZJ3|1|LG|C|2212

Current chains

Chain LG

LSU rRNA chain 6

Nearby chains

Chain Lf

Ribosomal protein eL19