HL_6ZJ3_047

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

A(A2M)GAGA(OMU)U

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_047 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3342

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

6ZJ3|1|LH|A|2707
6ZJ3|1|LH|A2M|2708
6ZJ3|1|LH|G|2709
6ZJ3|1|LH|A|2710
6ZJ3|1|LH|G|2711
6ZJ3|1|LH|A|2712
6ZJ3|1|LH|OMU|2713
6ZJ3|1|LH|U|2714

Current chains

Chain LH

LSU rRNA chain 7

Nearby chains

Chain L4

Ribosomal protein eL43

Chain LC

Large subunit ribosomal RNA; LSU rRNA

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain Lx

Ribosomal protein eL36