HL_6ZJ3_050
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GGGAACGGGC
- Length
- 10 nucleotides
- Bulged bases
- 6ZJ3|1|LH|A|2860, 6ZJ3|1|LH|A|2861, 6ZJ3|1|LH|C|2862
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_050 not in the Motif Atlas
- Homologous match to HL_8C3A_051
- Geometric discrepancy: 0.0617
- The information below is about HL_8C3A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90642.8
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6ZJ3|1|LH|G|2857
6ZJ3|1|LH|G|2858
6ZJ3|1|LH|G|2859
6ZJ3|1|LH|A|2860
6ZJ3|1|LH|A|2861
6ZJ3|1|LH|C|2862
6ZJ3|1|LH|G|2863
6ZJ3|1|LH|G|2864
6ZJ3|1|LH|G|2865
6ZJ3|1|LH|C|2866
Current chains
- Chain LH
- LSU rRNA chain 7
Nearby chains
- Chain LC
- Large subunit ribosomal RNA; LSU rRNA
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LQ
- Ribosomal protein uL3
- Chain Lu
- Ribosomal protein eL32
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