HL_6ZJ3_053
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CUG(OMG)GGCGG
- Length
- 9 nucleotides
- Bulged bases
- 6ZJ3|1|LI|G|3190
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_053 not in the Motif Atlas
- Geometric match to HL_4V9F_055
- Geometric discrepancy: 0.1155
- The information below is about HL_4V9F_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_11974.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
6ZJ3|1|LI|C|3188
6ZJ3|1|LI|U|3189
6ZJ3|1|LI|G|3190
6ZJ3|1|LI|OMG|3191
6ZJ3|1|LI|G|3192
6ZJ3|1|LI|G|3193
6ZJ3|1|LI|C|3194
6ZJ3|1|LI|G|3195
6ZJ3|1|LI|G|3196
Current chains
- Chain LI
- LSU rRNA chain 8
Nearby chains
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lc
- 60S ribosomal protein L10
- Chain Lq
- Ribosomal protein eL29
- Chain S3
- Transfer RNA; tRNA
Coloring options: