HL_6ZJ3_054

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

U(PSU)A(OMC)AACAC(6MZ)ACG

Length

13 nucleotides

Bulged bases

6ZJ3|1|LI|A|3209, 6ZJ3|1|LI|C|3216

QA status

Modified nucleotides: PSU, OMC, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|LI|U|3205
6ZJ3|1|LI|PSU|3206
6ZJ3|1|LI|A|3207
6ZJ3|1|LI|OMC|3208
6ZJ3|1|LI|A|3209
6ZJ3|1|LI|A|3210
6ZJ3|1|LI|C|3211
6ZJ3|1|LI|A|3212
6ZJ3|1|LI|C|3213
6ZJ3|1|LI|6MZ|3214
6ZJ3|1|LI|A|3215
6ZJ3|1|LI|C|3216
6ZJ3|1|LI|G|3217

Current chains

Chain LI

LSU rRNA chain 8

Nearby chains

Chain LE

Large subunit ribosomal RNA; LSU rRNA

Chain LF

Large subunit ribosomal RNA; LSU rRNA

Chain Lc

60S ribosomal protein L10

Chain Lh

Ribosomal protein eL21

Chain Lq

Ribosomal protein eL29