HL_6ZJ3_055

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_055 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.2043

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6ZJ3|1|LI|A|3246
6ZJ3|1|LI|A|3247
6ZJ3|1|LI|C|3248
6ZJ3|1|LI|A|3249
6ZJ3|1|LI|G|3250
6ZJ3|1|LI|A|3251
6ZJ3|1|LI|A|3252
6ZJ3|1|LI|A|3253
6ZJ3|1|LI|U|3254

Current chains

Chain LI

LSU rRNA chain 8

Nearby chains

Chain LS

Ribosomal protein uL5