HL_6ZJ3_056

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GAGAAGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_056 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1335

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6ZJ3|1|LI|G|3266
6ZJ3|1|LI|A|3267
6ZJ3|1|LI|G|3268
6ZJ3|1|LI|A|3269
6ZJ3|1|LI|A|3270
6ZJ3|1|LI|G|3271
6ZJ3|1|LI|G|3272
6ZJ3|1|LI|C|3273

Current chains

Chain LI

LSU rRNA chain 8

Nearby chains

Chain L4

Ribosomal protein eL43

Chain LE

Large subunit ribosomal RNA; LSU rRNA

Chain Lc

60S ribosomal protein L10

Chain Lh

Ribosomal protein eL21

Chain S3

Transfer RNA; tRNA