HL_6ZJ3_058

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GUGCAAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_058 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3211

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6ZJ3|1|LI|G|3318
6ZJ3|1|LI|U|3319
6ZJ3|1|LI|G|3320
6ZJ3|1|LI|C|3321
6ZJ3|1|LI|A|3322
6ZJ3|1|LI|A|3323
6ZJ3|1|LI|U|3324
6ZJ3|1|LI|C|3325

Current chains

Chain LI

LSU rRNA chain 8

Nearby chains

Chain L4

Ribosomal protein eL43

Chain LE

Large subunit ribosomal RNA; LSU rRNA

Chain Ld

Ribosomal protein uL18

Chain Lh

Ribosomal protein eL21