HL_6ZJ3_062

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

U(OMU)(OMG)(PSU)UCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_062 not in the Motif Atlas

Homologous match to HL_5TBW_063

Geometric discrepancy: 0.3439

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6ZJ3|1|LI|U|3507
6ZJ3|1|LI|OMU|3508
6ZJ3|1|LI|OMG|3509
6ZJ3|1|LI|PSU|3510
6ZJ3|1|LI|U|3511
6ZJ3|1|LI|C|3512
6ZJ3|1|LI|A|3513

Current chains

Chain LI

LSU rRNA chain 8

Nearby chains

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain LQ

Ribosomal protein uL3

Chain S2

Transfer RNA; tRNA