HL_6ZJ3_064

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_064 not in the Motif Atlas

Homologous match to HL_8C3A_066

Geometric discrepancy: 0.0875

The information below is about HL_8C3A_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZJ3|1|LJ|C|3615
6ZJ3|1|LJ|G|3616
6ZJ3|1|LJ|A|3617
6ZJ3|1|LJ|G|3618
6ZJ3|1|LJ|A|3619
6ZJ3|1|LJ|G|3620

Current chains

Chain LJ

LSU rRNA chain 9

Nearby chains

Chain L2

Ribosomal protein eL40

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain LT

Ribosomal protein uL6