HL_6ZJ3_068

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CGGAUGUG

Length

8 nucleotides

Bulged bases

6ZJ3|1|LL|A|3834, 6ZJ3|1|LL|U|3835, 6ZJ3|1|LL|U|3837

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_068 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1415

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6ZJ3|1|LL|C|3831
6ZJ3|1|LL|G|3832
6ZJ3|1|LL|G|3833
6ZJ3|1|LL|A|3834
6ZJ3|1|LL|U|3835
6ZJ3|1|LL|G|3836
6ZJ3|1|LL|U|3837
6ZJ3|1|LL|G|3838

Current chains

Chain LL

LSU rRNA chain 11

Nearby chains

Chain LJ

Large subunit ribosomal RNA; LSU rRNA

Chain LK

LSU rRNA chain 10

Chain LQ

Ribosomal protein uL3

Chain LW

Ribosomal protein uL13

Chain LZ

Ribosomal protein eL14