HL_6ZJ3_070
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CCAGACCAG
- Length
- 9 nucleotides
- Bulged bases
- 6ZJ3|1|LM|C|3922
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_070 not in the Motif Atlas
- Geometric match to HL_7RQB_068
- Geometric discrepancy: 0.1455
- The information below is about HL_7RQB_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_64690.1
- Basepair signature
- cWW-cSW-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6ZJ3|1|LM|C|3921
6ZJ3|1|LM|C|3922
6ZJ3|1|LM|A|3923
6ZJ3|1|LM|G|3924
6ZJ3|1|LM|A|3925
6ZJ3|1|LM|C|3926
6ZJ3|1|LM|C|3927
6ZJ3|1|LM|A|3928
6ZJ3|1|LM|G|3929
Current chains
- Chain LM
- LSU rRNA chain 12
Nearby chains
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- Large subunit ribosomal RNA; LSU rRNA
- Chain LN
- LSU rRNA chain 13
- Chain LQ
- Ribosomal protein uL3
- Chain Li
- Ribosomal protein uL22
- Chain Lt
- Ribosomal protein eL31
Coloring options: