HL_6ZJ3_073

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

G(OMU)UGAUCCUGC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_073 not in the Motif Atlas

Homologous match to HL_4V88_186

Geometric discrepancy: 0.111

The information below is about HL_4V88_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.2

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZJ3|1|S1|G|7
6ZJ3|1|S1|OMU|8
6ZJ3|1|S1|U|9
6ZJ3|1|S1|G|10
6ZJ3|1|S1|A|11
6ZJ3|1|S1|U|12
6ZJ3|1|S1|C|13
6ZJ3|1|S1|C|14
6ZJ3|1|S1|U|15
6ZJ3|1|S1|G|16
6ZJ3|1|S1|C|17

Current chains

Chain S1

18S rRNA

Nearby chains

Chain S5

A-site tRNA

Chain SF

Ribosomal protein uS5

Chain SP

Ribosomal protein uS12