HL_6ZJ3_084

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

6ZJ3|1|S1|A|513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_084 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.1555

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6ZJ3|1|S1|C|511
6ZJ3|1|S1|C|512
6ZJ3|1|S1|A|513
6ZJ3|1|S1|A|514
6ZJ3|1|S1|G|515
6ZJ3|1|S1|G|516

Current chains

Chain S1

18S rRNA

Nearby chains

Chain LY

Ribosomal protein uL14

Chain Lm

Ribosomal protein eL24

Chain SG

Ribosomal protein eS6