HL_6ZJ3_087

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CUAUCCAAAGACAG

Length

14 nucleotides

Bulged bases

6ZJ3|1|S1|U|624

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_087 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.2683

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZJ3|1|S1|C|623
6ZJ3|1|S1|U|624
6ZJ3|1|S1|A|625
6ZJ3|1|S1|U|626
6ZJ3|1|S1|C|627
6ZJ3|1|S1|C|628
6ZJ3|1|S1|A|629
6ZJ3|1|S1|A|630
6ZJ3|1|S1|A|631
6ZJ3|1|S1|G|632
6ZJ3|1|S1|A|633
6ZJ3|1|S1|C|634
6ZJ3|1|S1|A|635
6ZJ3|1|S1|G|636

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SD

Ribosomal protein uS4

Chain SZ

Ribosomal protein eS24