HL_6ZJ3_092

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UGCUCAAAG

Length

9 nucleotides

Bulged bases

6ZJ3|1|S1|G|1045

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_092 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.2018

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6ZJ3|1|S1|U|1044
6ZJ3|1|S1|G|1045
6ZJ3|1|S1|C|1046
6ZJ3|1|S1|U|1047
6ZJ3|1|S1|C|1048
6ZJ3|1|S1|A|1049
6ZJ3|1|S1|A|1050
6ZJ3|1|S1|A|1051
6ZJ3|1|S1|G|1052

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SD

Ribosomal protein uS4

Chain SE

Ribosomal protein eS4

Chain SZ

Ribosomal protein eS24