HL_6ZJ3_093

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CCCGCG(A2M)CG

Length

9 nucleotides

Bulged bases

6ZJ3|1|S1|C|1061, 6ZJ3|1|S1|C|1064

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_093 not in the Motif Atlas

Homologous match to HL_4V88_204

Geometric discrepancy: 0.4356

The information below is about HL_4V88_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.1

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

6ZJ3|1|S1|C|1057
6ZJ3|1|S1|C|1058
6ZJ3|1|S1|C|1059
6ZJ3|1|S1|G|1060
6ZJ3|1|S1|C|1061
6ZJ3|1|S1|G|1062
6ZJ3|1|S1|A2M|1063
6ZJ3|1|S1|C|1064
6ZJ3|1|S1|G|1065

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SZ

Ribosomal protein eS24