HL_6ZJ3_097

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_097 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.0983

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZJ3|1|S1|C|1334
6ZJ3|1|S1|G|1335
6ZJ3|1|S1|A|1336
6ZJ3|1|S1|A|1337
6ZJ3|1|S1|G|1338
6ZJ3|1|S1|G|1339

Current chains

Chain S1

18S rRNA

Nearby chains

Chain ST

Ribosomal protein uS15

Chain Sb

Ribosomal protein eS26