HL_6ZJ3_104

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

G(OMG)AGUGA(PSU)UU

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|S1|G|1704
6ZJ3|1|S1|OMG|1705
6ZJ3|1|S1|A|1706
6ZJ3|1|S1|G|1707
6ZJ3|1|S1|U|1708
6ZJ3|1|S1|G|1709
6ZJ3|1|S1|A|1710
6ZJ3|1|S1|PSU|1711
6ZJ3|1|S1|U|1712
6ZJ3|1|S1|U|1713

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SB

Ribosomal protein uS2

Chain SF

Ribosomal protein uS5

Chain SY

Ribosomal protein eS21