HL_6ZJ3_107

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CGCCACAAAG

Length

10 nucleotides

Bulged bases

6ZJ3|1|S1|C|1881

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_107 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.1971

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6ZJ3|1|S1|C|1878
6ZJ3|1|S1|G|1879
6ZJ3|1|S1|C|1880
6ZJ3|1|S1|C|1881
6ZJ3|1|S1|A|1882
6ZJ3|1|S1|C|1883
6ZJ3|1|S1|A|1884
6ZJ3|1|S1|A|1885
6ZJ3|1|S1|A|1886
6ZJ3|1|S1|G|1887

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SB

Ribosomal protein uS2

Chain SV

Ribosomal protein eS17

Chain Sh

RACK1