HL_6ZJ3_111
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GUCA(PSU)CAGC
- Length
- 9 nucleotides
- Bulged bases
- 6ZJ3|1|S1|A|2100, 6ZJ3|1|S1|C|2102, 6ZJ3|1|S1|G|2104
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_111 not in the Motif Atlas
- Homologous match to HL_4V88_220
- Geometric discrepancy: 0.3825
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6ZJ3|1|S1|G|2097
6ZJ3|1|S1|U|2098
6ZJ3|1|S1|C|2099
6ZJ3|1|S1|A|2100
6ZJ3|1|S1|PSU|2101
6ZJ3|1|S1|C|2102
6ZJ3|1|S1|A|2103
6ZJ3|1|S1|G|2104
6ZJ3|1|S1|C|2105
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain SC
- Ribosomal protein uS3
- Chain SL
- Ribosomal protein uS9
- Chain SM
- Ribosomal protein uS10
- Chain SS
- Ribosomal protein uS14
- Chain SX
- Ribosomal protein eS19
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