HL_6ZJ3_115
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- AUUGAA(MIA)AU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_115 not in the Motif Atlas
- Homologous match to HL_6GSK_203
- Geometric discrepancy: 0.1454
- The information below is about HL_6GSK_203
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
6ZJ3|1|S2|A|31
6ZJ3|1|S2|U|32
6ZJ3|1|S2|U|33
6ZJ3|1|S2|G|34
6ZJ3|1|S2|A|35
6ZJ3|1|S2|A|36
6ZJ3|1|S2|MIA|37
6ZJ3|1|S2|A|38
6ZJ3|1|S2|U|39
Current chains
- Chain S2
- A-tRNA
Nearby chains
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain S1
- Small subunit ribosomal RNA; SSU rRNA
- Chain S5
- A-site tRNA
- Chain SP
- Ribosomal protein uS12
- Chain SW
- Ribosomal protein uS19
- Chain Se
- Ribosomal protein eS30
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