HL_6ZJ3_118
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- AUUCAUAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_118 not in the Motif Atlas
- Homologous match to HL_4TUE_034
- Geometric discrepancy: 0.0934
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6ZJ3|1|S3|A|31
6ZJ3|1|S3|U|32
6ZJ3|1|S3|U|33
6ZJ3|1|S3|C|34
6ZJ3|1|S3|A|35
6ZJ3|1|S3|U|36
6ZJ3|1|S3|A|37
6ZJ3|1|S3|A|38
6ZJ3|1|S3|U|39
Current chains
- Chain S3
- P-tRNA
Nearby chains
- Chain S1
- Small subunit ribosomal RNA; SSU rRNA
- Chain S4
- Transfer RNA; tRNA
- Chain S5
- A-site tRNA
- Chain SL
- Ribosomal protein uS9
- Chain SW
- Ribosomal protein uS19
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