HL_6ZJ3_119

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GGUUCGAUUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_119 not in the Motif Atlas

Homologous match to HL_5UD5_003

Geometric discrepancy: 0.4481

The information below is about HL_5UD5_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

6ZJ3|1|S3|G|52
6ZJ3|1|S3|G|53
6ZJ3|1|S3|U|54
6ZJ3|1|S3|U|55
6ZJ3|1|S3|C|56
6ZJ3|1|S3|G|57
6ZJ3|1|S3|A|58
6ZJ3|1|S3|U|59
6ZJ3|1|S3|U|60
6ZJ3|1|S3|C|61

Current chains

Chain S3

P-tRNA

Nearby chains

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain LS

Ribosomal protein uL5