HL_6ZJ3_121
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_121 not in the Motif Atlas
- Homologous match to HL_3TUP_002
- Geometric discrepancy: 0.4716
- The information below is about HL_3TUP_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
6ZJ3|1|S4|A|31
6ZJ3|1|S4|U|32
6ZJ3|1|S4|U|33
6ZJ3|1|S4|G|34
6ZJ3|1|S4|A|35
6ZJ3|1|S4|A|36
6ZJ3|1|S4|A|37
6ZJ3|1|S4|A|38
6ZJ3|1|S4|U|39
Current chains
- Chain S4
- E-tRNA
Nearby chains
- Chain S1
- Small subunit ribosomal RNA; SSU rRNA
- Chain S3
- Transfer RNA; tRNA
- Chain S5
- A-site tRNA
- Chain SH
- Ribosomal protein uS7
- Chain SO
- Ribosomal protein uS11
- Chain Sd
- Ribosomal protein eS28
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