HL_6ZJ3_133

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GUGUCACAG(PSU)C

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|LI|G|3136
6ZJ3|1|LI|U|3137
6ZJ3|1|LI|G|3138
6ZJ3|1|LI|U|3139
6ZJ3|1|LI|C|3140
6ZJ3|1|LI|A|3141
6ZJ3|1|LI|C|3142
6ZJ3|1|LI|A|3143
6ZJ3|1|LI|G|3144
6ZJ3|1|LI|PSU|3145
6ZJ3|1|LI|C|3146

Current chains

Chain LI

LSU rRNA chain 8

Nearby chains

Chain LA

5.8S ribosomal RNA; 5.8S rRNA

Chain LB

Large subunit ribosomal RNA; LSU rRNA

Chain LV

60S ribosomal protein L7a

Chain Lk

Ribosomal protein uL23