HL_6ZJ3_136

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

AAAACC(PSU)

Length

7 nucleotides

Bulged bases

6ZJ3|1|S1|C|175

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_136 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.5336

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

6ZJ3|1|S1|A|170
6ZJ3|1|S1|A|171
6ZJ3|1|S1|A|172
6ZJ3|1|S1|A|173
6ZJ3|1|S1|C|174
6ZJ3|1|S1|C|175
6ZJ3|1|S1|PSU|176

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SG

Ribosomal protein eS6

Chain SZ

Ribosomal protein eS24