HL_6ZJ3_139

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

AGUGA(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_139 not in the Motif Atlas

Homologous match to HL_8P9A_217

Geometric discrepancy: 0.3046

The information below is about HL_8P9A_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

6ZJ3|1|S1|A|1706
6ZJ3|1|S1|G|1707
6ZJ3|1|S1|U|1708
6ZJ3|1|S1|G|1709
6ZJ3|1|S1|A|1710
6ZJ3|1|S1|PSU|1711

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SB

Ribosomal protein uS2

Chain SF

Ribosomal protein uS5