HL_6ZLW_011

3D structure

PDB id

6ZLW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

6ZLW|1|2|U|541

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZLW_011 not in the Motif Atlas

Geometric match to HL_6CB3_006

Geometric discrepancy: 0.3021

The information below is about HL_6CB3_006

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6ZLW|1|2|C|539
6ZLW|1|2|U|540
6ZLW|1|2|U|541
6ZLW|1|2|U|542
6ZLW|1|2|C|543
6ZLW|1|2|G|544

Current chains

Chain 2

18S ribosomal RNA

Nearby chains