HL_6ZLW_012

3D structure

PDB id

6ZLW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZLW_012 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1331

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZLW|1|2|A|569
6ZLW|1|2|C|570
6ZLW|1|2|U|571
6ZLW|1|2|U|572
6ZLW|1|2|U|573
6ZLW|1|2|A|574
6ZLW|1|2|A|575
6ZLW|1|2|A|576
6ZLW|1|2|U|577
6ZLW|1|2|C|578
6ZLW|1|2|C|579
6ZLW|1|2|U|580
6ZLW|1|2|U|581

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain Y

40S ribosomal protein S24