HL_6ZLW_027

3D structure

PDB id

6ZLW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZLW_027 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.5839

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

6ZLW|1|2|C|1460
6ZLW|1|2|G|1461
6ZLW|1|2|U|1462
6ZLW|1|2|U|1463
6ZLW|1|2|C|1464
6ZLW|1|2|A|1465
6ZLW|1|2|G|1466

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S17

Chain j

Receptor of activated protein C kinase 1