HL_6ZM7_003

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUCGACUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZM7_003 not in the Motif Atlas

Homologous match to HL_2BTE_004

Geometric discrepancy: 0.2169

The information below is about HL_2BTE_004

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6ZM7|1|CC|G|52
6ZM7|1|CC|U|53
6ZM7|1|CC|U|54
6ZM7|1|CC|C|55
6ZM7|1|CC|G|56
6ZM7|1|CC|A|57
6ZM7|1|CC|C|58
6ZM7|1|CC|U|59
6ZM7|1|CC|C|60

Current chains

Chain CC

tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Lz

60S ribosomal protein L10a