HL_6ZM7_017

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGACUGUCCCCAGUGC

Length

16 nucleotides

Bulged bases

6ZM7|1|L5|G|1178, 6ZM7|1|L5|U|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZM7|1|L5|G|1173
6ZM7|1|L5|G|1174
6ZM7|1|L5|A|1175
6ZM7|1|L5|C|1176
6ZM7|1|L5|U|1177
6ZM7|1|L5|G|1178
6ZM7|1|L5|U|1179
6ZM7|1|L5|C|1180
6ZM7|1|L5|C|1181
6ZM7|1|L5|C|1182
6ZM7|1|L5|C|1183
6ZM7|1|L5|A|1184
6ZM7|1|L5|G|1185
6ZM7|1|L5|U|1186
6ZM7|1|L5|G|1187
6ZM7|1|L5|C|1188

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like