Loop HL_6ZM7

3D structure

PDB id: 6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)
Description: SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å

Loop

Sequence: GAGAGGUGUAGAAUAAGUGGGAGGCCCGGGCCGCCGGUGAAAUACCACUACUCU
Length: 54 nucleotides
Bulged bases: 6ZM7|1|L5|A|3962, 6ZM7|1|L5|G|4035, 6ZM7|1|L5|U|4044, 6ZM7|1|L5|A|4047, 6ZM7|1|L5|U|4058
QA status: Missing nucleotides

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6ZM7|1|L5|G|3951
6ZM7|1|L5|A|3952
6ZM7|1|L5|G|3953
6ZM7|1|L5|A|3954
6ZM7|1|L5|G|3955
6ZM7|1|L5|G|3956
6ZM7|1|L5|U|3957
6ZM7|1|L5|G|3958
6ZM7|1|L5|U|3959
6ZM7|1|L5|A|3960
6ZM7|1|L5|G|3961
6ZM7|1|L5|A|3962
6ZM7|1|L5|A|3963
6ZM7|1|L5|U|3964
6ZM7|1|L5|A|3965
6ZM7|1|L5|A|3966
6ZM7|1|L5|G|3967
6ZM7|1|L5|U|3968
6ZM7|1|L5|G|3969
6ZM7|1|L5|G|3970
6ZM7|1|L5|G|3971
6ZM7|1|L5|A|3972
6ZM7|1|L5|G|3973
6ZM7|1|L5|G|3974
6ZM7|1|L5|C|3975
6ZM7|1|L5|C|3976
6ZM7|1|L5|C|3977
6ZM7|1|L5|G|4034
6ZM7|1|L5|G|4035
6ZM7|1|L5|G|4036
6ZM7|1|L5|C|4037
6ZM7|1|L5|C|4038
6ZM7|1|L5|G|4039
6ZM7|1|L5|C|4040
6ZM7|1|L5|C|4041
6ZM7|1|L5|G|4042
6ZM7|1|L5|G|4043
6ZM7|1|L5|U|4044
6ZM7|1|L5|G|4045
6ZM7|1|L5|A|4046
6ZM7|1|L5|A|4047
6ZM7|1|L5|A|4048
6ZM7|1|L5|U|4049
6ZM7|1|L5|A|4050
6ZM7|1|L5|C|4051
6ZM7|1|L5|C|4052
6ZM7|1|L5|A|4053
6ZM7|1|L5|C|4054
6ZM7|1|L5|U|4055
6ZM7|1|L5|A|4056
6ZM7|1|L5|C|4057
6ZM7|1|L5|U|4058
6ZM7|1|L5|C|4059
6ZM7|1|L5|U|4060

Current chains

Chain L5: 28S ribosomal RNA

Nearby chains

Chain CC: Transfer RNA; tRNA
Chain Lz: 60S ribosomal protein L10a

HL_6ZM7_059