HL_6ZM7_075

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6ZM7|1|L5|G|4694, 6ZM7|1|L5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZM7_075 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0541

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6ZM7|1|L5|C|4688
6ZM7|1|L5|U|4689
6ZM7|1|L5|G|4690
6ZM7|1|L5|A|4691
6ZM7|1|L5|A|4692
6ZM7|1|L5|C|4693
6ZM7|1|L5|G|4694
6ZM7|1|L5|C|4695
6ZM7|1|L5|C|4696
6ZM7|1|L5|U|4697
6ZM7|1|L5|C|4698
6ZM7|1|L5|U|4699
6ZM7|1|L5|A|4700
6ZM7|1|L5|A|4701
6ZM7|1|L5|G|4702

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40