HL_6ZM7_078

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6ZM7|1|L5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZM7_078 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0858

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6ZM7|1|L5|G|4975
6ZM7|1|L5|U|4976
6ZM7|1|L5|A|4977
6ZM7|1|L5|G|4978
6ZM7|1|L5|A|4979
6ZM7|1|L5|C|4980
6ZM7|1|L5|G|4981
6ZM7|1|L5|A|4982
6ZM7|1|L5|C|4983

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17