HL_6ZM7_089

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUUCGCGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZM7_089 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2306

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6ZM7|1|S2|C|195
6ZM7|1|S2|C|196
6ZM7|1|S2|U|197
6ZM7|1|S2|U|198
6ZM7|1|S2|C|199
6ZM7|1|S2|G|200
6ZM7|1|S2|C|201
6ZM7|1|S2|G|202
6ZM7|1|S2|G|203
6ZM7|1|S2|G|204

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8