HL_6ZM7_100
3D structure
- PDB id
- 6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UCUCGGCGGGGCCCGAA
- Length
- 17 nucleotides
- Bulged bases
- 6ZM7|1|S2|G|788, 6ZM7|1|S2|C|792
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZM7_100 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3857
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6ZM7|1|S2|U|747
6ZM7|1|S2|C|748
6ZM7|1|S2|U|749
6ZM7|1|S2|C|750
6ZM7|1|S2|G|751
6ZM7|1|S2|G|752
6ZM7|1|S2|C|753
6ZM7|1|S2|G|786
6ZM7|1|S2|G|787
6ZM7|1|S2|G|788
6ZM7|1|S2|G|789
6ZM7|1|S2|C|790
6ZM7|1|S2|C|791
6ZM7|1|S2|C|792
6ZM7|1|S2|G|793
6ZM7|1|S2|A|794
6ZM7|1|S2|A|795
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SH
- 40S ribosomal protein S7
- Chain SL
- 40S ribosomal protein S11
Coloring options: