HL_6ZM7_122

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAUGAGAGGUGUAGAAUAAGUGGGAGGCCCCCGGCGCCCCCCCGGUGUCCCCGCGAGGGGCCCGGGGCGGGGUCCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUACUCUGAUCG

Length

118 nucleotides

Bulged bases

6ZM7|1|L5|U|3957, 6ZM7|1|L5|A|3962, 6ZM7|1|L5|G|3969, 6ZM7|1|L5|C|3978, 6ZM7|1|L5|C|3979, 6ZM7|1|L5|G|3980, 6ZM7|1|L5|G|3981, 6ZM7|1|L5|C|3982, 6ZM7|1|L5|G|3983, 6ZM7|1|L5|C|3984, 6ZM7|1|L5|C|3985, 6ZM7|1|L5|C|3986, 6ZM7|1|L5|C|3987, 6ZM7|1|L5|C|3988, 6ZM7|1|L5|C|3989, 6ZM7|1|L5|C|3990, 6ZM7|1|L5|G|3991, 6ZM7|1|L5|G|3992, 6ZM7|1|L5|U|3993, 6ZM7|1|L5|G|3994, 6ZM7|1|L5|U|3995, 6ZM7|1|L5|C|3996, 6ZM7|1|L5|C|3997, 6ZM7|1|L5|C|3998, 6ZM7|1|L5|C|3999, 6ZM7|1|L5|G|4000, 6ZM7|1|L5|C|4001, 6ZM7|1|L5|G|4002, 6ZM7|1|L5|A|4003, 6ZM7|1|L5|G|4004, 6ZM7|1|L5|G|4005, 6ZM7|1|L5|G|4006, 6ZM7|1|L5|G|4007, 6ZM7|1|L5|C|4008, 6ZM7|1|L5|C|4009, 6ZM7|1|L5|C|4010, 6ZM7|1|L5|G|4011, 6ZM7|1|L5|G|4012, 6ZM7|1|L5|G|4013, 6ZM7|1|L5|G|4014, 6ZM7|1|L5|C|4015, 6ZM7|1|L5|G|4016, 6ZM7|1|L5|G|4017, 6ZM7|1|L5|G|4018, 6ZM7|1|L5|G|4019, 6ZM7|1|L5|U|4020, 6ZM7|1|L5|C|4021, 6ZM7|1|L5|C|4022, 6ZM7|1|L5|G|4023, 6ZM7|1|L5|C|4024, 6ZM7|1|L5|C|4025, 6ZM7|1|L5|G|4026, 6ZM7|1|L5|G|4027, 6ZM7|1|L5|C|4028, 6ZM7|1|L5|C|4029, 6ZM7|1|L5|C|4030, 6ZM7|1|L5|U|4031, 6ZM7|1|L5|G|4032, 6ZM7|1|L5|C|4033, 6ZM7|1|L5|G|4034, 6ZM7|1|L5|G|4035, 6ZM7|1|L5|C|4038, 6ZM7|1|L5|G|4039, 6ZM7|1|L5|G|4042, 6ZM7|1|L5|U|4044, 6ZM7|1|L5|G|4045, 6ZM7|1|L5|A|4047, 6ZM7|1|L5|C|4051, 6ZM7|1|L5|C|4052, 6ZM7|1|L5|A|4053, 6ZM7|1|L5|C|4054, 6ZM7|1|L5|U|4058, 6ZM7|1|L5|C|4059

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZM7|1|L5|C|3948
6ZM7|1|L5|A|3949
6ZM7|1|L5|U|3950
6ZM7|1|L5|G|3951
6ZM7|1|L5|A|3952
6ZM7|1|L5|G|3953
6ZM7|1|L5|A|3954
6ZM7|1|L5|G|3955
6ZM7|1|L5|G|3956
6ZM7|1|L5|U|3957
6ZM7|1|L5|G|3958
6ZM7|1|L5|U|3959
6ZM7|1|L5|A|3960
6ZM7|1|L5|G|3961
6ZM7|1|L5|A|3962
6ZM7|1|L5|A|3963
6ZM7|1|L5|U|3964
6ZM7|1|L5|A|3965
6ZM7|1|L5|A|3966
6ZM7|1|L5|G|3967
6ZM7|1|L5|U|3968
6ZM7|1|L5|G|3969
6ZM7|1|L5|G|3970
6ZM7|1|L5|G|3971
6ZM7|1|L5|A|3972
6ZM7|1|L5|G|3973
6ZM7|1|L5|G|3974
6ZM7|1|L5|C|3975
6ZM7|1|L5|C|3976
6ZM7|1|L5|C|3977
6ZM7|1|L5|C|3978
6ZM7|1|L5|C|3979
6ZM7|1|L5|G|3980
6ZM7|1|L5|G|3981
6ZM7|1|L5|C|3982
6ZM7|1|L5|G|3983
6ZM7|1|L5|C|3984
6ZM7|1|L5|C|3985
6ZM7|1|L5|C|3986
6ZM7|1|L5|C|3987
6ZM7|1|L5|C|3988
6ZM7|1|L5|C|3989
6ZM7|1|L5|C|3990
6ZM7|1|L5|G|3991
6ZM7|1|L5|G|3992
6ZM7|1|L5|U|3993
6ZM7|1|L5|G|3994
6ZM7|1|L5|U|3995
6ZM7|1|L5|C|3996
6ZM7|1|L5|C|3997
6ZM7|1|L5|C|3998
6ZM7|1|L5|C|3999
6ZM7|1|L5|G|4000
6ZM7|1|L5|C|4001
6ZM7|1|L5|G|4002
6ZM7|1|L5|A|4003
6ZM7|1|L5|G|4004
6ZM7|1|L5|G|4005
6ZM7|1|L5|G|4006
6ZM7|1|L5|G|4007
6ZM7|1|L5|C|4008
6ZM7|1|L5|C|4009
6ZM7|1|L5|C|4010
6ZM7|1|L5|G|4011
6ZM7|1|L5|G|4012
6ZM7|1|L5|G|4013
6ZM7|1|L5|G|4014
6ZM7|1|L5|C|4015
6ZM7|1|L5|G|4016
6ZM7|1|L5|G|4017
6ZM7|1|L5|G|4018
6ZM7|1|L5|G|4019
6ZM7|1|L5|U|4020
6ZM7|1|L5|C|4021
6ZM7|1|L5|C|4022
6ZM7|1|L5|G|4023
6ZM7|1|L5|C|4024
6ZM7|1|L5|C|4025
6ZM7|1|L5|G|4026
6ZM7|1|L5|G|4027
6ZM7|1|L5|C|4028
6ZM7|1|L5|C|4029
6ZM7|1|L5|C|4030
6ZM7|1|L5|U|4031
6ZM7|1|L5|G|4032
6ZM7|1|L5|C|4033
6ZM7|1|L5|G|4034
6ZM7|1|L5|G|4035
6ZM7|1|L5|G|4036
6ZM7|1|L5|C|4037
6ZM7|1|L5|C|4038
6ZM7|1|L5|G|4039
6ZM7|1|L5|C|4040
6ZM7|1|L5|C|4041
6ZM7|1|L5|G|4042
6ZM7|1|L5|G|4043
6ZM7|1|L5|U|4044
6ZM7|1|L5|G|4045
6ZM7|1|L5|A|4046
6ZM7|1|L5|A|4047
6ZM7|1|L5|A|4048
6ZM7|1|L5|U|4049
6ZM7|1|L5|A|4050
6ZM7|1|L5|C|4051
6ZM7|1|L5|C|4052
6ZM7|1|L5|A|4053
6ZM7|1|L5|C|4054
6ZM7|1|L5|U|4055
6ZM7|1|L5|A|4056
6ZM7|1|L5|C|4057
6ZM7|1|L5|U|4058
6ZM7|1|L5|C|4059
6ZM7|1|L5|U|4060
6ZM7|1|L5|G|4061
6ZM7|1|L5|A|4062
6ZM7|1|L5|U|4063
6ZM7|1|L5|C|4064
6ZM7|1|L5|G|4065

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain CC

Transfer RNA; tRNA

Chain Li

60S ribosomal protein L36

Chain Lz

60S ribosomal protein L10a

Chain SB

40S ribosomal protein S3a