HL_6ZM7_124

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCCCCCGUGG

Length

10 nucleotides

Bulged bases

6ZM7|1|S2|C|324, 6ZM7|1|S2|C|325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZM7|1|S2|C|321
6ZM7|1|S2|C|322
6ZM7|1|S2|C|323
6ZM7|1|S2|C|324
6ZM7|1|S2|C|325
6ZM7|1|S2|C|326
6ZM7|1|S2|G|327
6ZM7|1|S2|U|328
6ZM7|1|S2|G|329
6ZM7|1|S2|G|330

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6