HL_6ZME_001

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAACGGCUAUC

Length

12 nucleotides

Bulged bases

6ZME|1|CC|C|16, 6ZME|1|CC|G|17, 6ZME|1|CC|G|18, 6ZME|1|CC|C|19, 6ZME|1|CC|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZME_001 not in the Motif Atlas

Homologous match to HL_4V7M_038

Geometric discrepancy: 0.4536

The information below is about HL_4V7M_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23010.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6ZME|1|CC|G|12
6ZME|1|CC|U|13
6ZME|1|CC|A|14
6ZME|1|CC|A|15
6ZME|1|CC|C|16
6ZME|1|CC|G|17
6ZME|1|CC|G|18
6ZME|1|CC|C|19
6ZME|1|CC|U|20
6ZME|1|CC|A|21
6ZME|1|CC|U|22
6ZME|1|CC|C|23

Current chains

Chain CC

tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Lz

60S ribosomal protein L10a