HL_6ZME_008

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

6ZME|1|L5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZME_008 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.4699

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6ZME|1|L5|U|204
6ZME|1|L5|C|205
6ZME|1|L5|U|206
6ZME|1|L5|G|207
6ZME|1|L5|A|208
6ZME|1|L5|U|209
6ZME|1|L5|C|210
6ZME|1|L5|G|211

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LY

60S ribosomal protein L26