HL_6ZME_020

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCGCACGAAA

Length

10 nucleotides

Bulged bases

6ZME|1|L5|C|1365, 6ZME|1|L5|G|1366, 6ZME|1|L5|C|1367, 6ZME|1|L5|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZME|1|L5|U|1364
6ZME|1|L5|C|1365
6ZME|1|L5|G|1366
6ZME|1|L5|C|1367
6ZME|1|L5|A|1368
6ZME|1|L5|C|1369
6ZME|1|L5|G|1370
6ZME|1|L5|A|1371
6ZME|1|L5|A|1372
6ZME|1|L5|A|1373

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain LY

60S ribosomal protein L26