HL_6ZME_042

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZME_042 not in the Motif Atlas

Geometric match to HL_4WF9_016

Geometric discrepancy: 0.223

The information below is about HL_4WF9_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6ZME|1|L5|C|2561
6ZME|1|L5|G|2562
6ZME|1|L5|C|2563
6ZME|1|L5|G|2564
6ZME|1|L5|A|2565
6ZME|1|L5|G|2566

Current chains

Chain L5

28S ribosomal RNA

Nearby chains