3D structure

PDB id
6ZME (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CGGUUCCGG
Length
9 nucleotides
Bulged bases
6ZME|1|L5|U|2707, 6ZME|1|L5|U|2708, 6ZME|1|L5|C|2709, 6ZME|1|L5|G|2711
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ZME_046 not in the Motif Atlas
Geometric match to HL_7UQ6_001
Geometric discrepancy: 0.3736
The information below is about HL_7UQ6_001
Detailed Annotation
tRNA D-loop
Broad Annotation
No text annotation
Motif group
HL_20811.4
Basepair signature
cWW-cWS-F
Number of instances in this motif group
14

Unit IDs

6ZME|1|L5|C|2704
6ZME|1|L5|G|2705
6ZME|1|L5|G|2706
6ZME|1|L5|U|2707
6ZME|1|L5|U|2708
6ZME|1|L5|C|2709
6ZME|1|L5|C|2710
6ZME|1|L5|G|2711
6ZME|1|L5|G|2712

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain CA
Proliferation-associated protein 2G4
Chain LR
60S ribosomal protein L19
Chain LU
60S ribosomal protein L22
Chain LX
60S ribosomal protein L23a

Coloring options:


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