HL_6ZME_046
3D structure
- PDB id
- 6ZME (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGGUUCCGG
- Length
- 9 nucleotides
- Bulged bases
- 6ZME|1|L5|U|2707, 6ZME|1|L5|U|2708, 6ZME|1|L5|C|2709, 6ZME|1|L5|G|2711
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZME_046 not in the Motif Atlas
- Geometric match to HL_7UQ6_001
- Geometric discrepancy: 0.3736
- The information below is about HL_7UQ6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
6ZME|1|L5|C|2704
6ZME|1|L5|G|2705
6ZME|1|L5|G|2706
6ZME|1|L5|U|2707
6ZME|1|L5|U|2708
6ZME|1|L5|C|2709
6ZME|1|L5|C|2710
6ZME|1|L5|G|2711
6ZME|1|L5|G|2712
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain CA
- Proliferation-associated protein 2G4
- Chain LR
- 60S ribosomal protein L19
- Chain LU
- 60S ribosomal protein L22
- Chain LX
- 60S ribosomal protein L23a
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