HL_6ZME_059

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGACAUGAGAGGUGUAGAAUAAGUGGGAGGCCCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGUUU

Length

68 nucleotides

Bulged bases

6ZME|1|L5|A|3962, 6ZME|1|L5|G|4035, 6ZME|1|L5|C|4038, 6ZME|1|L5|U|4044, 6ZME|1|L5|A|4047, 6ZME|1|L5|C|4054, 6ZME|1|L5|U|4058

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZME|1|L5|A|3945
6ZME|1|L5|G|3946
6ZME|1|L5|A|3947
6ZME|1|L5|C|3948
6ZME|1|L5|A|3949
6ZME|1|L5|U|3950
6ZME|1|L5|G|3951
6ZME|1|L5|A|3952
6ZME|1|L5|G|3953
6ZME|1|L5|A|3954
6ZME|1|L5|G|3955
6ZME|1|L5|G|3956
6ZME|1|L5|U|3957
6ZME|1|L5|G|3958
6ZME|1|L5|U|3959
6ZME|1|L5|A|3960
6ZME|1|L5|G|3961
6ZME|1|L5|A|3962
6ZME|1|L5|A|3963
6ZME|1|L5|U|3964
6ZME|1|L5|A|3965
6ZME|1|L5|A|3966
6ZME|1|L5|G|3967
6ZME|1|L5|U|3968
6ZME|1|L5|G|3969
6ZME|1|L5|G|3970
6ZME|1|L5|G|3971
6ZME|1|L5|A|3972
6ZME|1|L5|G|3973
6ZME|1|L5|G|3974
6ZME|1|L5|C|3975
6ZME|1|L5|C|3976
6ZME|1|L5|C|3977
6ZME|1|L5|G|4034
6ZME|1|L5|G|4035
6ZME|1|L5|G|4036
6ZME|1|L5|C|4037
6ZME|1|L5|C|4038
6ZME|1|L5|G|4039
6ZME|1|L5|C|4040
6ZME|1|L5|C|4041
6ZME|1|L5|G|4042
6ZME|1|L5|G|4043
6ZME|1|L5|U|4044
6ZME|1|L5|G|4045
6ZME|1|L5|A|4046
6ZME|1|L5|A|4047
6ZME|1|L5|A|4048
6ZME|1|L5|U|4049
6ZME|1|L5|A|4050
6ZME|1|L5|C|4051
6ZME|1|L5|C|4052
6ZME|1|L5|A|4053
6ZME|1|L5|C|4054
6ZME|1|L5|U|4055
6ZME|1|L5|A|4056
6ZME|1|L5|C|4057
6ZME|1|L5|U|4058
6ZME|1|L5|C|4059
6ZME|1|L5|U|4060
6ZME|1|L5|G|4061
6ZME|1|L5|A|4062
6ZME|1|L5|U|4063
6ZME|1|L5|C|4064
6ZME|1|L5|G|4065
6ZME|1|L5|U|4066
6ZME|1|L5|U|4067
6ZME|1|L5|U|4068

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain CC

Transfer RNA; tRNA

Chain Li

60S ribosomal protein L36

Chain Lz

60S ribosomal protein L10a

Chain SB

40S ribosomal protein S3a