HL_6ZME_060

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGCCCCGAGGGGCU

Length

14 nucleotides

Bulged bases

6ZME|1|L5|G|4099, 6ZME|1|L5|G|4104

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZME|1|L5|A|4098
6ZME|1|L5|G|4099
6ZME|1|L5|C|4100
6ZME|1|L5|C|4101
6ZME|1|L5|C|4102
6ZME|1|L5|C|4103
6ZME|1|L5|G|4104
6ZME|1|L5|A|4105
6ZME|1|L5|G|4106
6ZME|1|L5|G|4107
6ZME|1|L5|G|4108
6ZME|1|L5|G|4109
6ZME|1|L5|C|4110
6ZME|1|L5|U|4111

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain Lg

60S ribosomal protein L34